Links to Analysis Tools
MICROARRAY FACILITY - LINKS TO ANALYSIS TOOLS
–Probe Profiler: used to process Affy image files to QC features of the cell file for consistency and efficiency of detection, generate E-scores and do group-wise comparisons.
–Clementine: Powerful and flexible data mining workbench to develop predictive models with a graphical interface to create reusable analysis streams. Supervised analysis: neural networks, C5.0, tree analysis. Unsupervised analysis: K-means clustering, Hierarchical clustering, data manipulation and filtering.
–Lexiquest Mine: Text mining software from SPSS.
–Pathway Assist: visualization and interpretation of biological pathways, gene regulation networks and protein-protein interaction maps, supports on-line searching of pubmed for pathway relationships.
–Omniviz: data mining and visualization tool scans pubmed and uses SAM program to find similar genes to the genes of interest.
–Mapping Arrays are available for large scale genotyping experiments, while Resequencing Arrays and Universal Arrays enable you to design an assay specific to your genetic region or organism of interest